* - these authors contributed equally. $ - corresponding author
152. P. S. Noerr, A. A. Abushawish, G. Pekkurnaz, and P. Rangamani$: Mitochondrial mechanics nucleates axonal jamming and swelling (biorxiv preprint, April 2026)
151. S. Park, I. Sarro, A. Kamatar, L. Wang, P. Rangamani, E. M. Lafer, J. Stachowiak$: Intrinsically disordered ligands for the control of receptor uptake by endocytosis (biorxiv preprint, April 2026)
150. S. M. Connolly, L. Bergner, A. Tiwari, T. S. Brant, S. Medford, S. Ramesh, E. D. Tidwell, Y. Yoo, K. Xiao, J. Gentry, L. Chang, B. Han, P. Rangamani, M. Doktorova, A. K. Kenworthy, S. Mosalaganti, M. D. Ohi: Structural basis of caveolin-driven membrane bending (biorxiv preprint, February 2026)
149. E. A. Francis, E. Sarikhani, H. Nagsch-Nilchi, Z. Jahed$, and P. Rangamani$: A predictive mechanochemical modeling framework for the deformation and remodeling of the nuclear lamina (biorxiv preprint, February 2026)
148. I. S. Devold, M. E. Rognes, and P. Rangamani$: Mechanochemical modeling of exercise-induced skeletal muscle hypertrophy (biorxiv preprint, December 2025)
147. E. A. Francis, J. Hamid*, A. Kumar*, and P. Rangamani$: Systems modeling reveals that store-operated calcium entry modulates force and fatigue during exercise (biorxiv preprint, May 2025)
146. M. Hur, T. Bartol, P. Rangamani, T. Sejnowski, and E. Mjolsness$: Synaptic spine head morphodynamics from graph grammar rules for actin dynamics (biorxiv preprint, 2025)
145. A. Khalilimeybodi, L. Qiao, A. Leung, A. McCulloch, S. Schenk, and P. Rangamani$: Systems modeling of mitochondrial dynamics in different exercise regimes (biorxiv preprint, October 2025). Accepted. J Physiol.
144. A. Contri, A. Massing, and P. Rangamani$: A finite element framework for bulk-surface coupled PDEs to solve moving boundary problems in biophysics (arXiv, biorxiv). Computer Methods in Applied Mechanics and Engineering. (Sep 1, 2026)
143. N. Momtahan, A. Trementozzi, S. Sohn, L. Qiao, C. Zhao, P. Rangamani, J. C. Stachowiak, J. Zoldan$: Bioengineered Vesicles Facilitate Cardiomyocyte Synchronization via Connexin 43 Enrichment. Adv. Sci. (April 28, 2026).
142. C. Walker, D. Mansour, U. Effiong, D. Jordan, L. Wang, E. M. Lafer, J. Alvarado, B. Belardi, P. Rangamani$, and J. C. Stachowiak$: A balance between nucleating and elongating actin filaments controls deformation of protein condensates. Sci. Adv. (2026)
141. K. Stark, M. Bonilla-Quintana, A. M. Sokac, and P. Rangamani$: Drosophila embryo cellularization is tuned by the viscoelastic properties of membrane-cortex linkers. Biophys. J. (Mar. 27, 2026)
140. L. Qiao, M. Alfonzo-Méndez, J. W. Taraska, and P. Rangamani$: Dynamics of the formation of flat clathrin lattices in response to growth factor stimulus. PLoS Comput. Biol. 22 (3 Mar. 11, 2026), e1014013
139. A. Mahapatra, S. A. Malingen, P. Rangamani$: Interplay between cortical adhesion and membrane bending regulates the formation of microparticles. Soft Matter (Feb. 3, 2026)
138. D. Mansour, D. Jordan, C. Walker, A. Chandrasekaran, C. T. Lee, K. Graham, J. C. Stachowiak$, and P. Rangamani$: Mechanochemical feedback between confinement and actin crosslinking drives the shape dynamics of liquid-like droplets. Nat. Commun. (Feb. 23, 2026)
137. K. Xiao and P. Rangamani$: Formation of extracellular vesicles depends on mechanical feedback of the cortex and the glycocalyx. Phys. Rev. Research 8, 013012 (Jan. 2026)
136. K. Zhu*, X. Guo*, A. Chandrasekaran*, X. Miao, P. Rangamani$, W. Zhao$, Y. Miao$: Membrane curvature initiates Cdc42-FBP17-N-WASP clustering and actin nucleation. EMBO J. (Jan. 3, 2026)
135. K. J. McCabe, M. Hernandez Mesa, and P. Rangamani$: Calcium dynamics in small spaces: lessons learned from modeling in dendritic spines. Biophys. J. (Sept. 29, 2025)
134. N. J. Linden-Santangeli, J. Zhang, B. M. Kramer$, and P. Rangamani$: Systems modeling and uncertainty quantification of AMP-activated protein kinase signaling. NPJ Syst. Biol. Appl. 11 (1 Oct. 14, 2025)
133. F. Catala-Castro*, M. Bonilla-Quintana*, N. Sanfeliu-Cerdan, P. Rangamani$, and M. Krieg$: Obstacles regulate membrane tension propagation to enable localized mechanotransduction. Nat. Phys. (Oct. 29, 2025)
132. N. J. Linden-Santangeli, J. Zhang, B. M. Kramer$, and P. Rangamani$: Increasing certainty in systems biology models using Bayesian multimodel inference. Nat. Commun. 16 (1 Aug. 11, 2025), p. 7416
131. E. Kobayashi, N. J. Linden-Santangeli, N. Chan, C. B. Toomey, S. Mudaliar, M. Temprosa, S. Edelstein, R. Goyal, P. Rangamani, A. R. Majithia, Diabetes Prevention Program Research Group: Longitudinal metabolic trajectories in Diabetes Prevention Program participants reveal subgroups with varying micro- and macrovascular complication risks. Diabetes Care (Aug. 26, 2025)
130. C. T. Lee$, K. Venkatraman, I. Budin, and P. Rangamani$: Local enrichment of cardiolipin to transient membrane undulations. Biophys. J. (June 25, 2025)
129. E. A. Francis, E. Sarikhani, et al.: Nanoscale curvature regulates YAP/TAZ nuclear localization through nuclear deformation and rupture. Adv. Sci. (Weinh.) e2415029 (June 3, 2025)
128. M. Hernandez Mesa, G. C. Garcia, F. Hoerndli, K. J. McCabe, P. Rangamani$: Spine apparatus modulates Ca2+ in spines through spatial localization of sources and sinks. J. Physiol. (Aug. 16, 2025)
127. K. Xiao and P. Rangamani$: Glycocalyx-induced formation of membrane tubes. Biophys. J. 124 (10 May 20, 2025), pp. 1631–1642
126. P. Rangamani$: Continuum modeling of lipid bilayers for curvature generation. Membrane Shape and Biological Function (May 26, 2025), p. 78
125. T. M. Bartol$*, M. Ordyan, T. J. Sejnowski, P. Rangamani*, and M. B. Kennedy$*: A spatial model of autophosphorylation of CaMKII predicts that the lifetime of phospho-CaMKII after induction of synaptic plasticity is greatly prolonged by CaM-trapping. Front. Synaptic Neurosci. 17 (Apr. 4, 2025), p. 1547948
124. K. Xiao, S. Park, J. C. Stachowiak$, and P. Rangamani$: Biophysical modeling of membrane curvature generation and curvature sensing by the glycocalyx. Proc. Natl. Acad. Sci. 122 (8 Feb. 25, 2025), e2418357122
123. M. Hernandez Mesa, K. J. McCabe, and P. Rangamani$: Synaptic cleft geometry modulates NMDAR opening probability by tuning neurotransmitter residence time. Biophys. J. (Jan. 28, 2025). Highlighted in Kaytanli and Bacca, Morphological trapping of neurotransmitters in synaptic clefts: A new dimension in neural plasticity, Biophysical Journal, 2025
122. M. Bonilla-Quintana, A. Ghisleni, N. C. Gauthier$, P. Rangamani$: Dynamic mechanisms for membrane skeleton transitions. J. Cell Sci. 138 (4 Feb. 15, 2025), JCS263473
121. C. Walker, A. Chandrasekaran*, D. Mansour*, K. Graham, A. Torres, L. Wang, E. M. Lafer, P. Rangamani$, and J. C. Stachowiak$: Liquid-like condensates that bind actin promote assembly and bundling of actin filaments. Dev. Cell 60 (11 Jun. 9, 2025), 1550–1567.e4
120. B. Debnath, B. N. Narasimhan, S. I. Fraley$, and P. Rangamani$: Modeling collagen fibril degradation as a function of matrix microarchitecture. Soft Matter 20 (46 Nov. 27, 2024), pp. 9286–9300
119. L. Qiao*, A. Khalilimeybodi*, N. Linden-Santangeli*, and P. Rangamani$: The evolution of systems biology and systems medicine: From mechanistic models to uncertainty quantification. Annu. Rev. Biomed. Eng. (Feb. 19, 2025)
118. L. Qiao, M. Getz, B. Gross, B. Tenner, J. Zhang$, and P. Rangamani$: Spatiotemporal orchestration of calcium-cAMP oscillations on AKAP/AC nanodomains is governed by an incoherent feedforward loop. PLoS Comput. Biol. 20 (10 Oct. 2024), e1012564
117. E. A. Francis*, J. G. Laughlin*, J. S. Dokken, H. N. T. Finsberg, C. T. Lee, M. E. Rognes$, and P. Rangamani$: Spatial modeling algorithms for reactions and transport (SMART) in biological cells. Nat. Comput. Sci. (Dec. 19, 2024)
116. H. Jafarinia, A. Khalilimeybodi, J. Barrasa-Fano, S. I. Fraley, P. Rangamani$, A. Carlier$: Insights gained from computational modeling of YAP/TAZ signaling for cellular mechanotransduction. NPJ Syst. Biol. Appl. 10, Article 90 (Aug. 15, 2024)
115. E. A. Francis and P. Rangamani$: Computational modeling establishes mechanotransduction as a potent modulator of the mammalian circadian clock. J. Cell Sci. (Aug. 14, 2024)
114. A. Ghisleni, M. Bonilla-Quintana, M. Crestani, A. Fukuzawa, P. Rangamani$, N. C. Gauthier$: Mechanically induced topological transition of spectrin regulates its distribution in the mammalian cell cortex. Nat. Commun. 15 (1 July 8, 2024), p. 5711
113. J. M. Griswold, M. Bonilla-Quintana*, R. Pepper*, C. T. Lee*, S. Raychaudhuri, S. Ma, Q. Gan, S. Syed, C. Zhu, M. Bell, M. Suga, Y. Yamaguchi, R. Chéreau, U. V. Nägerl, G. Knott, P. Rangamani$, S. Watanabe$: Membrane mechanics dictate axonal pearls-on-a-string morphology and function. Nat. Neurosci. (Dec. 2, 2024)
112. E. A. Francis$ and P. Rangamani$: Particle-based simulations shed light on cytoskeleton-membrane dynamics in phagocytosis. Biophys. J. 123 (9 May 7, 2024), pp. 1031–1033
111. A. Khalilimeybodi, J. J. Saucerman, P. Rangamani$: Modeling cardiomyocyte signaling and metabolism predicts genotype-to-phenotype mechanisms in hypertrophic cardiomyopathy. Comput. Biol. Med. 175 (108499 June 1, 2024), p. 108499
110. A. Fowler, K. R. Knaus, S. Khuu, A. Khalilimeybodi, S. Schenk, S. Ward, A. C. Fry, P. Rangamani, and A. D. McCulloch$: Network model of skeletal muscle cell signalling predicts differential responses to endurance and resistance exercise training. Exp. Physiol. 109 (6 June 2024), pp. 939–955
109. C. T. Lee$ and P. Rangamani$: Modeling the mechanochemical feedback for membrane-protein interactions using a continuum mesh model. Methods in Enzymology. Academic Press, Apr. 15, 2024
108. A. Chandrasekaran, K. Graham, J. C. Stachowiak$, and P. Rangamani$: Kinetic trapping organizes actin filaments within liquid-like protein droplets. Nat. Commun. 15 (1 Apr. 11, 2024), p. 3139
107. M. Bonilla-Quintana and P. Rangamani$: Biophysical modeling of actin-mediated structural plasticity reveals mechanical adaptation in dendritic spines. eNeuro 11 (3 Mar. 2024), ENEURO.0497-23.2024
106. C. T. Lee, M. K. Bell, M. Bonilla-Quintana, P. Rangamani$: Biophysical modeling of synaptic plasticity. Annu. Rev. Biophys. (Feb. 21, 2024)
105. K. Graham, A. Chandrasekaran, L. Wang, N. Yang, E. M. Lafer, P. Rangamani$, and J. C. Stachowiak$: Liquid-like condensates mediate competition between actin branching and bundling. Proc. Natl. Acad. Sci. 121 (3 Jan. 16, 2024), e2309152121
104. Y. Chen, D. Saintillan$, and P. Rangamani$: Interplay between mechanosensitive adhesions and membrane tension regulates cell motility. PRX Life 1 (2 Dec. 6, 2023), p. 023007
103. H. Alimohamadi and P. Rangamani$: Effective cell membrane tension protects red blood cells against malaria invasion. PLoS Comput. Biol. 19 (12 Dec. 2023), e1011694
102. L. A. Parra-Rivas*, K. Madhivanan*, B. D. Aulston, L. Wang, D. D. Prakashchand, N. P. Boyer, V. M. Saia-Cereda, K. Branes-Guerrero, D. P. Pizzo, P. Bagchi, V. S. Sundar, Y. Tang, U. Das, D. A. Scott, P. Rangamani, Y. Ogawa, and S. Roy$: Serine-129 phosphorylation of α-synuclein is an activity-dependent trigger for physiologic protein-protein interactions and synaptic function. Neuron 111 (24 Dec. 20, 2023), 4006–4023.e10
101. J. G. Laughlin, J. S. Dokken, H. N. T. Finsberg, E. A. Francis, C. T. Lee, M. E. Rognes, P. Rangamani$: SMART: Spatial Modeling Algorithms for Reaction and Transport. J. Open Source Softw. 8 (90 Oct. 19, 2023), p. 5580
100. K. Venkatraman, C. T. Lee*, G. C. Garcia*, A. Mahapatra*, G. Perkins, K-Y Kim, H. A. Pasolli, S. Phan, J. Lippincott-Schwartz, M. Ellisman, P. Rangamani$, I. Budin$: Cristae formation is a mechanical buckling event controlled by the inner mitochondrial membrane lipidome. EMBO J. 42 (24 Dec. 11, 2023), e114054
99. H. Nakamura$, E. Rho, C. T. Lee, K. Itoh, D. Deng, S. Razavi, H. T. Matsubayashi, C. Zhu, E. Jung, P. Rangamani, S. Watanabe, T. Inoue$: ActuAtor, a Listeria-inspired molecular tool for physical manipulation of intracellular organizations through de novo actin polymerization. Cell Rep. 42 (10 Oct. 31, 2023), p. 113089
98. G. C. Garcia, K. Gupta, T. M. Bartol, T. J. Sejnowski, P. Rangamani$: Mitochondrial morphology governs ATP production rate. J. Gen. Physiol. 155 (9 Sept. 4, 2023)
97. A. Leung and P. Rangamani$: Computational modeling of AMPK and mTOR crosstalk in glutamatergic synapse calcium signaling. NPJ Syst. Biol. Appl. 9, 34 (2023)
96. F. Yuan, C. T. Lee, J. Houser, A. Sangani, L. Wang, E. Lafer, P. Rangamani$, and J. C. Stachowiak$: The ins and outs of membrane bending by intrinsically disordered proteins. Science Advances 9 (27 2023), eadg3485
95. A. Mahapatra and P. Rangamani$: Formation of protein-mediated bilayer tubes is governed by a snapthrough transition. Soft Matter (May 31, 2023), 19, 4345–4359
94. P. Rangamani$: Active nematic fluid films. J. Fluid Mech. 960 (F1 Apr. 10, 2023), F1
93. L. Qiao*, S. Sinha*, A. A. A. El-Hafeez, I-C. Lo, T. Ngo, N. Aznar, I. Lopez-Sanchez, V. Gupta, M. G. Farquhar, P. Rangamani$, and P. Ghosh$: A circuit for secretion-coupled cellular autonomy in multicellular eukaryotic cells. Mol. Syst. Biol. 19 (4 Apr. 12, 2023)
92. L. Qiao, P. Ghosh$, and P. Rangamani$: Design principles of improving the dose-response alignment in coupled GTPase switches. NPJ Syst. Biol. Appl. 9, 3 (2023)
91. M. K. Bell and P. Rangamani$: Crosstalk between biochemical signaling network architecture and trafficking governs AMPAR dynamics in synaptic plasticity. J. Physiol. 601 (15 Jan. 9, 2023): 3377–3402
90. E. P. Campbell, A. A. Abushawish, L. A. Valdez, M. K. Bell, M. Haryono, P. Rangamani, and B. L. Bloodgood$: Electrical signals in the ER are cell type and stimulus specific with extreme spatial compartmentalization in neurons. Cell Rep. 42 (1 Jan. 31, 2023), p. 111943
89. K. D. Graham, A. Chandrasekaran, L. Wang, A. Ladak, E. M. Lafer, P. Rangamani$, and J. C. Stachowiak$: Liquid-like VASP condensates drive actin polymerization and dynamic bundling. Nat. Phys. 19 (4 Apr. 2023), pp. 574–585
88. A. Khalilimeybodi, S. I. Fraley$, and P. Rangamani$: Mechanisms underlying divergent relationships between Ca2+ and YAP/TAZ signalling. J. Physiol. 601 (3 Feb. 2023): 483–515
87. M. K. Bell, C. T. Lee, and P. Rangamani$: Spatiotemporal modeling reveals geometric dependence of AMPAR dynamics on dendritic spine morphology. J. Physiol. 601 (15 Nov. 3, 2022): 3329–3350
86. N. J. Linden, B. Kramer$, and P. Rangamani$: Bayesian parameter estimation for dynamical models in systems biology. PLoS Comput. Biol. 18 (10 Oct. 21, 2022), e1010651
85. S. A. Malingen and P. Rangamani$: Modelling membrane curvature generation using mechanics and machine learning. J. R. Soc. Interface 19 (194 Sept. 21, 2022), p. 20220448
84. M. K. Bell*, M. V. Holst*, C. T. Lee, and P. Rangamani$: Dendritic spine morphology regulates calcium-dependent synaptic weight change. J. Gen. Physiol. 154 (8 July 2022), e202112980
83. C. Zhu, C. T. Lee$, and P. Rangamani$: Mem3DG: Modeling membrane mechanochemical dynamics in 3D using discrete differential geometry. Biophys. Rep. 2 (3 Sept. 14, 2022), p. 100062
82. M. Hernandez Mesa, J. van den Brink, W. E. Louch, K. J. McCabe, and P. Rangamani$: Nanoscale organization of ryanodine receptor distribution and phosphorylation pattern determines the dynamics of calcium sparks. PLoS Comput. Biol. 18 (6 June 2022), e1010126
81. D. Serwas, M. Akamatsu, A. Moayed, K. Vegesna, R. Vasan, J. M. Hill, J. Schoeneberg, K. M. Davies, P. Rangamani, and D. G. Drubin$: Mechanistic insights into actin force generation during vesicle formation from cryo-electron tomography. Dev. Cell 57 (9 May 9, 2022), 1132–1145.e5
80. M. Bonilla-Quintana and P. Rangamani$: Can biophysical models of dendritic spines be used to explore synaptic changes associated with addiction?. Phys. Biol. 19 (4 July 2022), p. 041001
79. P. Rangamani$: The many faces of membrane tension: challenges across systems and scales. BBA Biomembranes 1864 (7 July 1, 2022), p. 183897
78. R. B. Nowak*, H. Alimohamadi*, K. Personjamasp, P. Rangamani, and V. Fowler$: Nanoscale dynamics of actin filaments in the red blood cell membrane skeleton. Mol. Biol. Cell 33 (3 Mar. 1, 2022), ar28
77. D. Auddya*, X. Zhang*, R. Gulati, R. Vasan, K. Garikipati, P. Rangamani, and S. Rudraraju$: Biomembranes undergo complex, non-axisymmetric deformations governed by Kirchhoff-Love kinematics and revealed by a three-dimensional computational framework. Proc. Roy. Soc. A 477 (2255 Nov. 2021), p. 20210246
76. A. Mahapatra, D. Saintillan$, and P. Rangamani$: Curvature-driven feedback on aggregation-diffusion of proteins in lipid bilayers. Soft Matter 17 (36 Sept. 22, 2021), pp. 8373–8386
75. R. Mendelsohn*, G. C. Garcia*, T. M. Bartol, C. T. Lee, P. Khandelwal, E. Liu, D. J. Spencer, A. Husar, E. A. Bushong, S. Phan, M. H. Ellisman, A. Skupin, T. J. Sejnowski$, and P. Rangamani$: Morphological principles of neuronal mitochondria. J. Comp. Neurol. (Oct. 5, 2021)
74. H. Alimohamadi, M. Bell, S. Halpain, and P. Rangamani$: Mechanical principles governing the shapes of dendritic spines. Frontiers in Physiology (June 16, 2021)
73. A. Leung, D. Ohadi, G. Pekkurnaz, and P. Rangamani$: Systems modeling predicts that mitochondria ER contact sites regulate the postsynaptic energy landscape. NPJ Syst. Biol. Appl. 7 (1 June 2, 2021), p. 26
72. K. E. Scott, S. I. Fraley$, and P. Rangamani$: A spatial model of YAP/TAZ signaling reveals how stiffness, dimensionality, and shape contribute to emergent outcomes. Proc. Natl. Acad. Sci. 118 (20 May 18, 2021), e2021571118
71. M. K. Bell and P. Rangamani$: Design decisions for incorporating spatial and mechanical aspects in models of signaling networks. Curr. Opin. Syst. Biol. 25 (Mar. 1, 2021), pp. 70–77
70. F. Yuan, H. Alimohamadi, B. Bakka, A. N. Trementozzi, N. L. Fawzi, P. Rangamani$, and J. C. Stachowiak$: Membrane bending by protein phase separation. Proc. Natl. Acad. Sci. 118 (11 Mar. 16, 2021), e2017435118
69. K. R. Stevens$, K. S. Masters, P. I. Imoukhuede, K. A. Haynes, L. A. Setton, E. Cosgriff-Hernandez, M. A. L. Bell, P. Rangamani, S. E. Sakiyama-Elbert, S. D. Finley, R. K. Willits, A. N. Koppes, N. C. Chesler, K. L. Christman, J. B. Allen, J. Y. Wong, H. El-Samad, T. A. Desai, and O. Eniola-Adefeso$: Fund Black scientists. Cell 184 (3 Feb. 4, 2021), pp. 561–565
68. L. M. Stolerman, P. Ghosh$, and P. Rangamani$: Stability analysis of a signaling circuit with dual species of GTPase switches. Bull. Math. Biol. 83 (4 Feb. 20, 2021), p. 34
67. C. T. Lee, M. Akamatsu, and P. Rangamani$: The value of models for membrane budding in clathrin-mediated endocytosis. Curr. Opin. Cell Biol. 71 (Aug. 2021), pp. 38–45
66. K. J. McCabe$ and P. Rangamani: Computational modeling approaches to cAMP/PKA signaling in cardiomyocytes. J. Mol. Cell. Cardiol. 154 (May 2021), pp. 32–40
65. A. Mahapatra*, C. Uysalel*, and P. Rangamani$: The mechanics and thermodynamics of tubule formation in biological membranes. J. Membr. Biol. 254 (3 June 2021), pp. 273–291 (Cover)
64. R. R. Molina, S. Liese, H. Alimohamadi, P. Rangamani, and A. Carlson$: Diffuso-kinetic membrane budding dynamics. Soft Matter (Dec. 23, 2020)
63. B. Tenner, M. Getz, B. Ross, D. Ohadi, C. Bohrer, E. Greenwald, S. Mehta, J. Xiao, P. Rangamani$, and J. Zhang$: Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit. eLife 9 (Nov. 17, 2020), e55013
62. R. C. Calizo*, M. K. Bell*, A. Ron, M. Hu, S. Bhattacharya, N. J. Wong, W. G. M. Janssen, G. Perumal, P. Pederson, S. Scarlata, J. Hone, E. U. Azeloglu, P. Rangamani$, and R. Iyengar$: Cell shape regulates subcellular organelle location to control early Ca2+ signal dynamics in vascular smooth muscle cells. Sci. Rep. 10 (1 Oct. 20, 2020), p. 17866
61. P. K. Kreeger$, A. Brock, H. C. Gibbs, K. J. Grande-Allen, A. H. Huang, K. S. Masters, P. Rangamani, M. R. Reagan, and S. L. Servoss: Ten simple rules for women scientists during a pandemic. PLoS Comput. Biol. (2020)
60. J. A. Nirody$, I. Budin, and P. Rangamani$: ATP synthase: evolution, energetics, and membrane interactions. J. Gen. Physiol. 152 (11 Nov. 2, 2020), e201912475
59. J. Z. Zhang, T.-W. Lu, L. M. Stolerman, B. Tenner, J. R. Yang, J.-F. Zhang, M. Falcke, P. Rangamani, S. S. Taylor, S. Mehta, and J. Zhang$: Phase separation of a PKA regulatory subunit controls cAMP compartmentation and oncogenic signaling. Cell 182 (6 Sept. 17, 2020), 1531–1544.e15
58. P. Rangamani$, A. Behzadan, and M. J. Holst: Local sensitivity analysis of the 'membrane shape equation' derived from the Helfrich energy. Math. Mech. Solids 26 (3 Mar. 1, 2021), pp. 356–385
57. A. Mahapatra, D. Saintillan, and P. Rangamani$: Transport phenomena in fluid films with curvature elasticity. J. Fluid Mech. 905 (A8 Dec. 25, 2020), A8
56. M. Ordyan, T. Bartol, M. B. Kennedy, P. Rangamani$, and T. Sejnowski$: Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator. PLoS Comput. Biol. 16 (7 2020), e1008015
55. H. Alimohamadi, A. S. Smith, R. Nowak, V. Fowler, and P. Rangamani$: Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation. PLoS Comput. Biol. 16 (5 May 2020), e1007890
54. C. T. Lee*, J. G. Laughlin*, N. Angliviel de La Beaumelle, R. E. Amaro, J. A. McCammon, R. Ramamoorthi, M. J. Holst, and P. Rangamani$: 3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. PLoS Comput. Biol. 16 (4 Apr. 6, 2020), e1007756
53. M. Getz, P. Rangamani$, and P. Ghosh$: Regulating cellular cyclic AMP: 'Sources', 'Sinks', and now, 'Tunable Valves'. WIREs Syst. Biol. Med. (Apr. 23, 2020), e1490
52. H. Alimohamadi, B. Ovryn, and P. Rangamani$: Modeling membrane nanotube morphology: the role of heterogeneity in composition and material properties. Sci. Rep. 10 (1 Feb. 13, 2020), p. 2527
51. L. M. Stolerman*, M. Getz*, S. G. Llewellyn Smith, M. Holst, and P. Rangamani$: Stability analysis of a bulk-surface reaction model for membrane-protein clustering. Bull. Math. Biol. 82 (2 Feb. 6, 2020), pp. 1–34
50. M. Akamatsu, R. Vasan, D. Serwas, M. Ferrin, P. Rangamani$, and D. G. Drubin$: Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis. eLife 9 (Jan. 17, 2020)
49. R. Vasan, M. Rowan, C. T. Lee, G. R. Johnson, P. Rangamani, and M. Holst$: Applications and challenges of machine learning to enable realistic cellular simulations. Front. Phys. 7 (2020), p. 247. Editor's Choice, Computational Physics
48. O. B. Tarun, H. I. Okur, P. Rangamani, and S. Roke$: Transient domains of ordered water induced by divalent ions lead to lipid membrane curvature fluctuations. Commun. Chem. 3 (1 Feb. 7, 2020), p. 17
47. R. Vasan, S. Rudraraju, M. Akamatsu, K. Garikipati, and P. Rangamani$: A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction. Soft Matter 16 (3 Jan. 22, 2020), pp. 784–797
46. C. T. Lee$, J. Laughlin, J. B. Moody, R. E. Amaro, J. A. McCammon, M. Holst, and P. Rangamani$: An open-source mesh generation platform for biophysical modeling using realistic cellular geometries. Biophys. J. 118 (5 Mar. 10, 2020), pp. 1003–1008
45. K. M. Pearce*, M. Bell*, W. H. Linthicum, Q. Wen, J. Srinivasan, P. Rangamani$, and S. Scarlata$: Gαq-mediated calcium dynamics and membrane tension modulate neurite plasticity. Mol. Biol. Cell 31 (7 Mar. 19, 2020), pp. 683–694
44. D. Ohadi, D. Schmitt, B. Calabrese, S. Halpain, J. Zhang, and P. Rangamani$: Computational modeling reveals frequency modulation of calcium-cAMP/PKA pathway in dendritic spines. Biophys. J. 117 (10 Nov. 19, 2019), pp. 1963–1980
43. D. Ohadi and P. Rangamani$: Geometric control of frequency modulation of cAMP oscillations due to calcium in dendritic spines. Biophys. J. 117 (10 Oct. 9, 2019), pp. 1981–1994
42. R. Vasan, M. M. Maleckar, C. D. Williams$, and P. Rangamani$: DLITE uses cell-cell interface movement to better infer cell-cell tensions. Biophys. J. 117 (9 Nov. 5, 2019), pp. 1714–1727
41. M. Chabanon and P. Rangamani$: Geometric coupling of helicoidal ramps and curvature-inducing proteins in organelle membranes. J. R. Soc. Interface 16 (158 Sept. 27, 2019), p. 20190354
40. A. Cugno, T. Bartol, T. Sejnowski, R. Iyengar, and P. Rangamani$: Geometric principles of second messenger dynamics in dendritic spines. Sci. Rep. 9 (2019), p. 11676
39. M. Bell, T. Bartol, T. Sejnowski, and P. Rangamani$: Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. J. Gen. Physiol. 151 (8 Aug. 5, 2019), pp. 1017–1034
38. K. E. Scott*, K. Rychel*, S. Ranamukhaarachchi, P. Rangamani, and S. I. Fraley$: Emerging themes and unifying concepts underlying cell behavior regulation by the pericellular space. Acta Biomater. 96 (Sept. 15, 2019), pp. 81–98
37. M. C. Getz, L. Swanson, R. Sahoo, P. Ghosh$, and P. Rangamani$: A predictive computational model reveals that GIV/Girdin serves as a tunable valve for EGFR-stimulated cyclic AMP signals. Mol. Biol. Cell 30 (13 June 15, 2019), pp. 1621–1633
36. O. Igoshin, J. Chen, J. Xing, J. Liu, T. C. Elston, M. Grabe, K. S. Kim, J. Nirody, P. Rangamani, S. Sun, and C. Wolgemuth: Biophysics at the coffee shop: lessons learned working with George Oster. Mol. Biol. Cell 30 (16 July 22, 2019), pp. 1882–1889
35. A. Bour, S. G. Kruglik, M. Chabanon, P. Rangamani, N. Puff, and S. Bonneau: Lipid unsaturation properties govern the sensitivity of membranes to photo-induced oxidative stress. Biophys. J. 116 (5 Feb. 2, 2019), pp. 910–920
34. H. Alimohamadi and P. Rangamani$: Modeling membrane curvature generation due to membrane-protein interactions. Biomolecules 8 (4 2018), p. 120
33. H. Alimohamadi*, R. Vasan*, J. Hassinger, J. C. Stachowiak, and P. Rangamani$: The role of traction in membrane curvature generation. Mol. Biol. Cell 29 (16 Aug. 8, 2018), pp. 2024–2035
32. R. Vasan, M. S. Akamatsu, J. Schöneberg, and P. Rangamani$: Intracellular membrane trafficking: modeling local movements in cells. In: Cell Movement. Birkhäuser, Cham, 2018, pp. 259–301
31. M. Chabanon$ and P. Rangamani$: Solubilization kinetics determines the pulsatory dynamics of lipid vesicles exposed to surfactant. BBA Biomembranes 1860 (10 Oct. 2018), pp. 2032–2041
30. M. Chabanon and P. Rangamani$: Gaussian curvature directs the distribution of spontaneous curvature on bilayer membrane necks. Soft Matter 14 (12 Mar. 28, 2018), pp. 2281–2294
29. W. Su*, D. Gettel*, M. Chabanon*, P. Rangamani$, and A. Parikh$: Pulsatile gating of giant vesicles containing macromolecular crowding agents induced by colligative nonideality. J. Am. Chem. Soc. 140 (2 Jan. 2018), pp. 691–699
28. M. Getz, J. Nirody, and P. Rangamani$: Stability analysis in spatial modeling of cell signaling. WIREs Syst. Biol. Med. 10 (1 2018), e1395
27. M. Chabanon, J. Ho, B. Liedberg, A. Parikh, and P. Rangamani$: Pulsatile lipid vesicles under osmotic stress. Biophys. J. 112 (8 Apr. 2017), pp. 1682–1691 (cover)
26. W. T. Snead, C. C. Hayden, A. K. Gadok, C. Zhao, E. M. Lafer, P. Rangamani, J. C. Stachowiak$: Membrane fission by protein crowding. Proc. Natl. Acad. Sci. 114 (16 Apr. 18, 2017), E3258–E3267 (cover)
25. M. Chabanon, J. C. Stachowiak, and P. Rangamani$: Systems biology of cellular membranes: a convergence with biophysics. WIREs Syst. Biol. Med. 9 (5 Sept. 2017), e1386
24. P. Ghosh, P. Rangamani, and I. Kufareva: The GAPs, GEFs, GDIs and...now, GEMs: new kids on the heterotrimeric G protein signaling block. Cell Cycle 16 (7 2017), pp. 607–612
23. J. E. Hassinger, G. Oster, D. G. Drubin, and P. Rangamani$: Design principles for robust vesiculation in clathrin-mediated endocytosis. Proc. Natl. Acad. Sci. 114 (7 2017), E1118–1127
22. S. K. Lim, A. S. W. Wong, H. M. de Hoog, P. Rangamani, A. N. Parikh, M. Nallani, S. Sandin, and B. Liedberg: Spontaneous formation of nanometer scale tubular vesicles in aqueous mixtures of lipid and block copolymer amphiphiles. Soft Matter 13 (6 Feb. 8, 2017), pp. 1107–1115 (cover)
21. P. Rangamani$, M. G. Levy, S. Khan, G. Oster$: Paradoxical signaling regulates structural plasticity in dendritic spines. Proc. Natl. Acad. Sci. 113 (36 Sept. 6, 2016), E5298–E5307
20. K. Sriram*, J. G. Laughlin*, P. Rangamani$, D. M. Tartakovsky$: Shear-induced nitric oxide production by endothelial cells. Biophys. J. 111 (1 July 12, 2016), pp. 208–221
19. J. Ho, P. Rangamani, B. Liedberg, and A. Parikh: Mixing water, transducing energy, and shaping membranes: autonomously self-regulating giant vesicles. Langmuir 32 (9 Feb. 2016) (cover)
18. S. Ray, A. Kassan, A. R. Busija, P. Rangamani, and H. H. Patel: The plasma membrane as a capacitor for energy and metabolism. Am. J. Physiol. Cell Physiol. 310 (3 Feb. 1, 2016), pp. C181–C192
17. F. Bahmani, J. Christenson, and P. Rangamani$: Analysis of lipid flow on minimal surfaces. Contin. Mech. Thermodyn. (July 2015)
16. E. K. Eckhert, P. Rangamani, A. E. Davis, G. Oster, and J. Berleman: Dual biochemical oscillators may control cellular reversals in Myxococcus xanthus. Biophys. J. 107 (11 Dec. 2014), pp. 2700–2711
15. K. Oglecka, P. Rangamani, R. Kraut, B. Liedberg, and A. N. Parikh: Oscillatory phase separation in giant lipid vesicles induced by transmembrane osmotic differentials. eLife 3 (Oct. 15, 2014), e03695 (cover)
14. P. Rangamani$ and D. J. Steigmann: Variable tilt on lipid membranes. Proc. Roy. Soc. A 470 (2172 Dec. 8, 2014), pp. 20140463
13. P. Rangamani, K. K. Mandadapu, and G. Oster: Protein-induced membrane curvature alters local membrane tension. Biophys. J. 107 (3 Aug. 2014), pp. 751–762
12. P. Rangamani, A. Benjamini, A. Agrawal, B. Smit, D. Steigmann, and G. Oster: Small scale membrane mechanics. Biomech. Model. Mechanobiol. 13 (4 Aug. 1, 2014), pp. 697–711
11. P. Rangamani, G. Y. Xiong, and R. Iyengar: Multiscale modeling of cell shape from the actin cytoskeleton. Prog. Mol. Biol. Transl. Sci. 123 (Jan. 2014), pp. 143–167
10. P. Rangamani, D. Zhang, G. Oster, and A. Shen: Lipid nanotube formation driven by osmotic pressure. J. R. Soc. Interface 10 (88 Nov. 2013), p. 20130637
9. P. Rangamani, A. Lipshtat, E. U. Azeloglu, R. C. Calizo, M. Hu, S. Ghassemi, J. Hone, S. Scarlata, S. R. Neves, and R. Iyengar: Decoding information in cell shape. Cell 154 (6 Sept. 12, 2013), pp. 1356–1369
8. P. Rangamani, A. Agrawal, K. K. Mandadapu, G. Oster, and D. J. Steigmann: Interaction between surface shape and intra-surface viscous flow on lipid membranes. Biomech. Model. Mechanobiol. 12 (4 Aug. 1, 2013), pp. 833–845
7. P. Rangamani, M. Fardin, Y. Xiong, A. Lipshtat, O. Rossier, M. P. Sheetz, and R. Iyengar: Signaling network triggers and membrane physical properties control the actin cytoskeleton-driven isotropic phase of cell spreading. Biophys. J. 100 (4 Feb. 16, 2011), pp. 845–857
6. M. Fardin*, O. Rossier*, P. Rangamani, P. Avignan, W. Vougenut, A. Mathur, R. Iyengar, and M. P. Sheetz: Cell spreading as a hydrodynamic process. Soft Matter 6 (19 2010), pp. 4788–4799
5. Y. Xiong*, P. Rangamani*, M. Fardin, B. Dubin-Thaler, A. Lipshtat, M. P. Sheetz, and R. Iyengar: Mechanisms controlling cell size and shape during isotropic cell spreading. Biophys. J. 98 (10 May 19, 2010), pp. 2136–2146
4. P. Rangamani and R. Iyengar: Modeling cellular signaling systems. Essays Biochem. 45 (2008), pp. 83–94
3. S. R. Neves, P. Tsokas, A. Sarkar, E. A. Grace, P. Rangamani, J. C. Bhatt, R. D. Blitzer, I. I. Moraru, and R. Iyengar: Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks. Cell 133 (4 May 16, 2008), pp. 666–680
2. P. Rangamani and R. Iyengar: Modeling spatio-temporal interactions in the cell. J. Biosci. 32 (1 Jan. 2007), pp. 157–167
1. P. Rangamani and L. Sirovich: Survival and apoptotic pathways initiated by TNF-alpha: modeling and predictions. Biotechnol. Bioeng. 97 (5 Aug. 1, 2007), pp. 1216–1229